Pancreatitis Amplified (CFTR, PRSS1, SPINK1 with CFTR del/dup)

The Ambry Test: Pancreatitis AMPLIFIED includes gene sequence analysis of PRSS1, SPINK1 and CFTR, and deletion/duplication analysis of CFTR. It does not include analysis of CTRC.  It detects approximately 99% of mutations in PRSS1, SPINK1 and CFTR.

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The Ambry Test: Pancreatitis AMPLIFIED includes gene sequence analysis of PRSS1, SPINK1 and CFTR, and deletion/duplication analysis of CFTR. It does not include analysis of CTRC.  It detects approximately 99% of mutations in PRSS1, SPINK1 and CFTR.

Chronic pancreatitis (CP) is characterized by recurring inflammatory attacks that gradually cause irreversible damage to the pancreas and surrounding tissue. Risk factors for chronic pancreatitis fall into the following categories: toxic metabolic, idiopathic, autoimmune, obstructive, recurrent, and genetic. Alcoholism is the primary cause of chronic pancreatitis, but in some cases, chronic pancreatitis is inherited. Hereditary pancreatitis usually begins in childhood and is an autosomal dominant condition caused by mutations in the major pancreatic gene PRSS1. At least 17 mutations have been described (R122H the most common) on the PRSS1 gene that either cause or are associated with chronic pancreatitis. SPINK1 is a modifier gene, the normal function of which is to inhibit potential trypsin activity in the pancreas. Mutations in SPINK1 impair this protective function and have been identified as risk factors in idiopathic, familial, tropical and alcoholic pancreatitis. At least 14 mutations have been identified (N34S the most common) on the SPINK1 gene. Cystic Fibrosis (CF) is an autosomal recessive disorder and has an incidence of 1/3200 births in the U.S and a carrier frequency of 1/25 for Non-Hispanic Caucasian. Some forms of CF are also known to cause pancreatitis. Chymotrypsin C, encoded by the CTRC gene, normally functions to prevent premature trypsinogen activation in the pancreas and to permit trypsin degradation in the gut. Variants in the CTRC gene that reduce Chymotrypsin C’s activity or production have been detected with increased frequency in some patients with idiopathic chronic pancreatitis.  

The Ambry Test: Pancreatitis AMPLIFIED includes gene sequence analysis of PRSS1, SPINK1 and CFTR, and deletion/duplication analysis of CFTR

Analysis of CTRC is not included as part of this test. It is available individually or as part of Pancreatitis Plus Panel.  Please see additional testing options on the Test by Disease page under Pancreatitis.

Disease Name 
Pancreatitis
Disease Information 

Chronic pancreatitis (CP) is characterized by recurring inflammatory attacks that gradually cause irreversible damage to the pancreas and surrounding tissue. Risk factors for chronic pancreatitis fall into the following categories: toxic metabolic, idiopathic, autoimmune, obstructive, recurrent, and genetic. Alcoholism is the primary cause of chronic pancreatitis, but in some cases, chronic pancreatitis is inherited.  Hereditary pancreatitis usually begins in childhood and is an autosomal dominant condition caused by mutations in the major pancreatic gene PRSS1. At least 17 mutations have been described (R122H the most common) on the PRSS1 gene that either cause or are associated with chronic pancreatitis. SPINK1 is a modifier gene, the normal function of which is to inhibit potential trypsin activity in the pancreas. Mutations in SPINK1 impair this protective function and have been identified as risk factors in idiopathic, familial, tropical and alcoholic pancreatitis. At least 14 mutations have been identified (N34S the most common) on the SPINK1 gene. Cystic Fibrosis (CF) is an autosomal recessive disorder and has an incidence of 1/3200 births in the U.S and a carrier frequency of 1/25 for Non-Hispanic Caucasian. Some forms of CF are also known to cause pancreatitis. Chymotrypsin C, encoded by the CTRC gene, normally functions to prevent premature trypsinogen activation in the pancreas and to permit trypsin degradation in the gut. Variants in the CTRC gene that reduce Chymotrypsin C’s activity or production have been detected with increased frequency in some patients with idiopathic chronic pancreatitis.  

Testing Benefits & Indication 

Pancreatitis AMPLIFIED is useful for diagnostic confirmation in symptomatic individuals, and for testing of at-risk asymptomatic family members. Testing can help avoid repeated diagnostic tests and help guide recommendations for surveillance and reducing exposure to environmental risk factors such as smoking and alcohol use. Sequence analysis of individual genes alone or in combination is also available. Specific mutation analysis of individual mutations identified previously in a family member is also available. 

Test Description 

CFTR: Sequence variations in the following CFTR promoter region, exons, and critical intronic regions that could contribute to CF are analyzed using the Ambry Test: CF: 983 bases of 5' untranslated region (UTR) and  exons 1 to 24 (a total of 27 exons), plus at least 20 bases into the 5' and 3' ends of all the introns. CFTR poly T status, TG repeat, intron 19s 3849+10kbC>T mutation, and intron 11s 1811+1634A>G mutation (aka 1811+1.6kbA>G) are also analyzed. Gross del/dup analysis determines gene copy number for any of the 27 exons. Previously described mutations and novel variants will always be reported. Polymorphisms and the poly T status will be reported upon request.  All 23 ACOG and ACMG recommended mutations are analyzed using the Ambry Test: CF.  PRSS1: Sequence variations in the following exons and critical intronic regions that could contribute to chronic pancreatitis (CP) are analyzed using the Ambry Test: PRSS1 exons 1 to 5, plus at least 20 bases into the 5' and 3' ends of all the introns.  In addition, the PRSS1 gene is analyzed in the 5' UTR at -28 nucleotides for a known deletion mutation.  SPINK1: Sequence variations in the following exons and critical intronic regions that could contribute to CP are analyzed using the Ambry Test: SPINK1 exons 1 to 4, plus at least 20 bases into the 5' and 3' ends of all the introns.  In addition, the SPINK1 gene is analyzed in the 5' UTR up to at least the -215 position and intron 3 region up to nucleotide +184.  The following sites are used to search for previously described variants in the CFTR, PRSS1, and SPINK1 genes: HGMD and online search engines (i.e. PubMed).  Toronto Sick Children's CF database and Leipzig Databases are also used to search for previously described CFTR and PRSS1/SPINK1 mutations and polymorphisms, respectively.

Mutation Detection Rate 

Pancreatitis AMPLIFIED detects approximately 99% of mutations in the PRSS1, SPINK1 and CFTR genes.

Billing Codes 
Test Code Technique CPT Codes
8020 Pancreatitis Panel (CFTR, PRSS1, SPINK1) 83891x1, 83894x4, 83898x94, 83903x44, 83904x3, 83909x3, 83912x3
8040 Pancreatitis Panel and CFTR Deletion / Duplication 83891x1, 83894x2, 83898x89, 83903x41, 83904x3, 83900x1, 83901x27, 83909x3, 83912x4

 

Turnaround Time 
Technique Days
Pancreatitis Panel (CFTR, PRSS1, SPINK1) 14-28
Pancreatitis Panel and CFTR Deletion / Duplication 14-35

 

Genes 
References 

References available upon request.