CDKL5 (CDKL5-Related Infantile Spasms and Atypical Rett Syndrome)

Mutations in the CDKL5 gene can result in a wide variety of symptoms and disorders. Common symptoms in those with CDKL5 mutations include mental retardation and seizures in all cases, hypotonia, stereotypic hand movements, and Autism in 75% of patients.

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Mutations in the CDKL5 gene can result in a wide variety of symptoms and disorders. Common symptoms in those with CDKL5 mutations include mental retardation and seizures in all cases, hypotonia, stereotypic hand movements, and Autism in 75% of patients.

Mutations are X-linked dominant and the majority are de novo.

Testing for CDKL5-Related Infantile Spasms should be considered in those with Atypical Rett Syndrome, MECP2-negative Rett Syndrome, X-Linked Infantile Spasms (ISSX, West syndrome, or the Hanefield variant), complex seizures disorders with mental retardation, X-linked Mental Retardation, and Autism spectrum disorder.

This Ambry Test is a full Gene Sequence Analysis of the CDKL5 gene. For additional information about MECP2 and Rett Syndrome testing, please refer to the Ambry Test: Rett Syndrome.

Disease Name 
Infantile Spasms, CDKL5-Related
Atypical Rett Syndrome
Autism/Autism Spectrum Disorder
X-Linked Intellectual Disabilities
Rett Syndrome, MECP2-negative
Disease Information 

Mutations in the CDKL5 gene, previously known as STK9,1 can result in a wide variety of symptoms and disorders. Common symptoms in those with CDKL5 mutations include early seizures and severe intellectual disability, failure to develop appropriate motor skills, hypotonia, hand stereotypies, infantile spasms, persistent epilepsy and autism.2 Studies have shown that the CDKL5 gene likely plays an upstream role in the same molecular pathway as MECP2, which is associated with Rett Syndrome, by mediating its phosphorylation. Mutations in CDKL5 have been associated with atypical variants of Rett Syndrome (RTT), and with X-linked Dominant Infantile Spasm Syndrome (ISSX2).3

RTT is a severe, progressive neurologic disorder, characterized by apparently normal development in the first 6-18 months, followed by rapid regression in intelligence, language and motor skills, and development of streotypic hand movements and autistic characteristics.

Atypical variants of Rett Syndrome include Infantile Spasm syndrome, also known as West syndrome or the Hanefeld variant. Due to lack of function of the protein associated with CDKL5, symptoms often include severe infantile spasms, profound global developmental arrest, hypsarrhythmia and severe mental retardation.4

Infantile Spasm Syndrome (ISSX) affects 2 to 5 individuals per 10,000 births. Symptoms linked to mutations in the CDKL5 gene account for mental retardation and seizures in all cases, hypotonia and hand stereotypes in 85%, and epilepsy, infantile spasms, and autism in 75% of patients. Approximately 17% of patients diagnosed with ISSX have a CDKL5 mutation.7

Boys with mutations in CDKL5 present with symptoms of severe encephalopathy and early-onset intractable epilepsy.CDKL5 mutations are X-linked dominant, and the majority of mutations are de novo.

Testing Benefits & Indication 

Testing for CDKL5 should be considered in those with atypical Rett Syndrome, MECP2-negative Rett Syndrome, X-Linked Infantile Spasms, complex seizures disorders with mental retardation, X-linked mental retardation, and autism spectrum disorder.2, 6 Prenatal diagnosis and carrier testing are also available.

Test Description 

This Ambry Test: CDKL5 is a full gene sequence analysis performed by PCR-based double-stranded automated sequencing in the sense and antisense directions for exons 2-21 of the CDKL5 gene. Specific mutation analysis for individual CDKL5 mutations known to be in the family is also available.

Mutation Detection Rate 

As stated above, approximately 17% of patients diagnosed with ISSX have a CDKL5 mutation (clinical sensitivity). This Ambry Test identifies approximately 99% of described mutations (analytic sensitivity).

Specimen Requirements 

Blood: Collect 3-5 cc from adult or 2 cc minimum from child into EDTA purple-top tube (first choice) or ACD yellow-top tube (second choice). Store at room temperature or refrigerate. Ship at room temperature.
Blood Spot: Call for availability.
Saliva: Collect 2 ml into Oragene™ DNA Self-Collection container. Store and ship at room temperature.
DNA: Send 20 μg in TE at 50-100 ng/μl. Store frozen and ship on ice or dry ice.
Prenatal: Prenatal testing is available. Please call an Ambry Genetic Counselor to discuss your case.

Billing Codes 
Test Code Technique CPT Codes
2040 CDKL5 Gene Sequence Analysis 83891x1, 83894x23, 83898x22, 83904x43, 83909x43, 83912x1

 

Turnaround Time 
Technique Days
CDKL5 Gene Sequence Analysis 10-21

 

Specialty 
Genes 
References 

1 Weaving LS, Ellaway CJ, Gecz J, Christodoulou J. J Med Genet. 2005;42:1-7.
2 Bahi-Buisson N, Nectoux J, Rosas-Vargas H, et al. Brain. 2008;131:2647-2661.
3 Scala, E, Ariani, F.,Mari, F, Caselli R, et al. J. Med. Genet. 2005;42,103–107.
4 Kalscheuer V, Tao J, Donnelly AJ. Am J Hum Genet. 2003;72:1404-1411.
5 Elia , Falco M, Ferri R, et al. Neurology. 2008;71:997-999.
6 Weaving LS, Christodoulou J, Williamson SL, et al. Am J Hum Genet. 2004;75(6):1079-93.
7 Archer, H, Evans, J, Edwards, S, et al. J. Med. Genet. 2006; 43:729-734.